- parse_args() (in module pyGenClean.Ethnicity.plot_eigenvalues)
- parseArgs() (in module pyGenClean.Contamination.contamination)
- plot_baf_lrr() (in module pyGenClean.SexCheck.baf_lrr_plot)
- plot_gender() (in module pyGenClean.SexCheck.gender_plot)
- plot_heterozygosity() (in module pyGenClean.NoCallHetero.heterozygosity_plot)
- plot_related_data() (in module pyGenClean.RelatedSamples.find_related_samples)
- plotMDS() (in module pyGenClean.Ethnicity.check_ethnicity)
- print_data_to_file() (in module pyGenClean.SexCheck.gender_plot)
- printConcordance() (in module pyGenClean.DupSamples.duplicated_samples)
- printDuplicatedTPEDandTFAM() (in module pyGenClean.DupSamples.duplicated_samples)
- printProblems() (in module pyGenClean.DupSNPs.duplicated_snps)
- printStatistics() (in module pyGenClean.DupSamples.duplicated_samples)
- printUniqueTFAM() (in module pyGenClean.DupSamples.duplicated_samples)
- processTPED() (in module pyGenClean.DupSamples.duplicated_samples)
- processTPEDandTFAM() (in module pyGenClean.NoCallHetero.clean_noCall_hetero_snps)
- ProgramError, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25]
- pyGenClean (module)
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