Python Module Index

p


	p
	`pyGenClean`
	`pyGenClean.Contamination`
	`pyGenClean.Contamination.contamination`
	`pyGenClean.DupSamples`
	`pyGenClean.DupSamples.duplicated_samples`
	`pyGenClean.DupSNPs`
	`pyGenClean.DupSNPs.duplicated_snps`
	`pyGenClean.Ethnicity`
	`pyGenClean.Ethnicity.check_ethnicity`
	`pyGenClean.Ethnicity.find_outliers`
	`pyGenClean.Ethnicity.plot_eigenvalues`
	`pyGenClean.FlagHW`
	`pyGenClean.FlagHW.flag_hw`
	`pyGenClean.FlagMAF`
	`pyGenClean.FlagMAF.flag_maf_zero`
	`pyGenClean.HeteroHap`
	`pyGenClean.HeteroHap.remove_heterozygous_haploid`
	`pyGenClean.LaTeX`
	`pyGenClean.LaTeX.auto_report`
	`pyGenClean.LaTeX.merge_reports`
	`pyGenClean.LaTeX.utils`
	`pyGenClean.MarkerMissingness`
	`pyGenClean.MarkerMissingness.snp_missingness`
	`pyGenClean.Misc`
	`pyGenClean.Misc.compare_gold_standard`
	`pyGenClean.NoCallHetero`
	`pyGenClean.NoCallHetero.clean_noCall_hetero_snps`
	`pyGenClean.NoCallHetero.heterozygosity_plot`
	`pyGenClean.pipeline_error`
	`pyGenClean.PlateBias`
	`pyGenClean.PlateBias.plate_bias`
	`pyGenClean.PlinkUtils`
	`pyGenClean.PlinkUtils.compare_bim`
	`pyGenClean.PlinkUtils.plot_MDS`
	`pyGenClean.PlinkUtils.plot_MDS_standalone`
	`pyGenClean.PlinkUtils.subset_data`
	`pyGenClean.RelatedSamples`
	`pyGenClean.RelatedSamples.find_related_samples`
	`pyGenClean.RelatedSamples.merge_related_samples`
	`pyGenClean.run_data_clean_up`
	`pyGenClean.SampleMissingness`
	`pyGenClean.SampleMissingness.sample_missingness`
	`pyGenClean.SexCheck`
	`pyGenClean.SexCheck.baf_lrr_plot`
	`pyGenClean.SexCheck.gender_plot`
	`pyGenClean.SexCheck.sex_check`
	`pyGenClean.version`