Source code for pyGenClean

# This file is part of pyGenClean.
#
# pyGenClean is free software: you can redistribute it and/or modify it under
# the terms of the GNU General Public License as published by the Free Software
# Foundation, either version 3 of the License, or (at your option) any later
# version.
#
# pyGenClean is distributed in the hope that it will be useful, but WITHOUT ANY
# WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR
# A PARTICULAR PURPOSE.  See the GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License along with
# pyGenClean.  If not, see <http://www.gnu.org/licenses/>.


import logging


try:
    from .version import pygenclean_version as __version__
except:
    __version__ = None


__author__ = "Louis-Philippe Lemieux Perreault"
__copyright__ = "Copyright 2014, Beaulieu-Saucier Pharmacogenomics Centre"
__credits__ = ["Louis-Philippe Lemieux Perreault", "Marc-Andre Legault"]
__license__ = "GPL"
__maintainer__ = "Louis-Philippe Lemieux Perreault"
__email__ = "louis-philippe.lemieux.perreault@statgen.org"
__status__ = "Development"


# Configuring logging
logging.basicConfig(
    level=logging.INFO,
    format="[%(asctime)s %(name)s %(levelname)s] %(message)s",
    datefmt="%Y-%m-%d %H:%M:%S",
)


def add_file_handler_to_root(log_fn):
    """Adds a file handler to the root logging.

    :param log_fn: the name of the log file.

    :type log_fn: str

    """
    file_handler = logging.FileHandler(log_fn, mode="w")
    file_handler.setFormatter(logging.Formatter(
        fmt="[%(asctime)s %(name)s %(levelname)s] %(message)s",
        datefmt="%Y-%m-%d %H:%M:%S",
    ))
    logging.root.addHandler(file_handler)